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Hi,I am a masters student in bioinformatics. You will be doing homework 1. We are using R for the homework 1 that I attached below and for the class. You will need the renal carcinoma zip files...

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Hi,I am a masters student in bioinformatics. You will be doing homework 1. We are using R for the homework 1 that I attached below and for the class. You will need the renal carcinoma zip files because the run those files to do the homework. I also added lecture 2 and 3 because the homework is based on the lectures and you will find codes that are relevant to the homework at the end of the lectures. I also have video guidance about what the homework is asking but I can't download it here but I will send it to you if we make arrangement.
Answered 2 days After Sep 30, 2021

Solution

Mohd answered on Oct 03 2021
142 Votes
---
title: '-'
author: '-'
date: "10/3/2021"
output: word_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE,cache = TRUE,warning = FALSE,message = FALSE,dpi = 180,fig.width = 8,fig.height = 5)
```
Loading Packages
```{r}
li
ary(readr)
li
ary(magrittr)
li
ary(dplyr)
li
ary(ggplot2)
li
ary(rmarkdown)
li
ary(MASS)
```
```{r}
en_carci <- read.delim("renal_cell_carcinoma.txt")
en_car_anno <- read.csv("renal_carcinoma_annotation.txt",
sep = ";", header = FALSE)
enc_df <- as.data.frame(ren_carci)
```
```{r}
colnames(renc_df) <- c("GSM146778_Normal",
"GSM146780_Normal",
"GSM146782_Normal",
"GSM146784_Normal",
"GSM146786_Normal",
"GSM146789_Normal",
"GSM146790_Normal",
"GSM146792_Normal",
"GSM146794_Normal",
"GSM146798_Normal",
"GSM146796_Normal",
"GSM146779_Tumor",
"GSM146781_Tumor",
"GSM146783_Tumor",
"GSM146785_Tumor",
"GSM146787_Tumor",
"GSM146788_Tumor",
"GSM146791_Tumor",
"GSM146799_Tumor",
"GSM146793_Tumor",
"GSM146795_Tumor",
"GSM146797_Tumor") #column names...
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