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For your final project, using materials from previous weeks, you need to create an ontology in Protégé.The ontology needs to be medical in nature. For examples, an ontology of chronic diseases or an...

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For your final project, using materials from previous weeks, you need to create an ontology in Protégé.The ontology needs to be medical in nature. For examples, an ontology of chronic diseases or an ontology on biomedical imaging. You will need to submit a 12 slide PowerPoint Presentation on your ontology (not including the title or reference slides), as well as additionalscreenshots/.PDF of your ontology from Protégé if needed.

Your presentation should include:

  • An introduction and background to your ontology.
  • A discussion on:
    • Why ontologies are important in healthcare
    • What ontologies are used for in healthcare
    • Your ontology created in Protégé.
      • your classes in the ontology and how you came up with them
      • your main topics in the ontology and how you came up with them
      • your object properties and their domains and ranges in the ontology and how you came up with them
      • your property characteristics in the ontology and how you came up with them
      • Where your ontology could be applied
    • Conclusion
      • A reflection on using Protégé and creating an ontology
    • Bibliography
      • Three additional sources used

The ontology in Protégé needs to include at least:

  • Five top classes/main categories (example: pizza, pizza_base, pizza_topping)
  • Ten main topics/class hierarchy (example: pizza_base <- thick_crust, thin_crust, etc.)
  • List of object properties and their domains and ranges (example: has_base)
  • Add property characteristics
  • Create closure axiom
  • Add definitions for the defined classes

You also need to include at least 75 words of speaker notes per slide below each slide. Make sure to cite all references in APA format. Please review the rubric for further grading items. This is an individual project. No group work will be accepted.

Rubric

Some Rubric
Some Rubric
CriteriaRatingsPts
This criterion is linked to a Learning OutcomeName/Font/Formatting
5pts
Excellent
Includes the student’s name, uses fonts and formatting consistently throughout the report. Paper looks professional
3pts
Good
Includes the student’s name, uses fonts and formatting consistently throughout the report
2pts
Acceptable
Uses different fonts and multiple font sizes or does not include the student’s name/heading
0pts
Unacceptable
N/A
5pts
This criterion is linked to a Learning OutcomePresentation Length
5pts
Excellent
Meets the slide requirement.
0pts
Unacceptable
Does not meet the slide requirement.
5pts
This criterion is linked to a Learning OutcomeIntroduction
10pts
Excellent
Presents a detailed background to what the paper is about.
6pts
Good
Minimally discusses what the paper is about.
4pts
Acceptable
Introduction does not relate to the paper.
0pts
Unacceptable
Paper is lacking a suitable introduction to the paper
10pts
This criterion is linked to a Learning OutcomeOntology Criteria
100pts
Excellent
Presents a detail summary on what the ontology is about, its background, why its needed, and how and where it can be used.
60pts
Good
Presents a summary on what the ontology is about, why it’s needed, and how and where it can be used.
40pts
Acceptable
Discussion is short and lacks details of the ontology criteria.
0pts
Unacceptable
Does not include a summary on the ontology criteria
100pts
This criterion is linked to a Learning OutcomeOntology in Protégé
• Five top classes/main categories
• Ten main topics/class hierarchy
• List of object properties and their domains and ranges
• Property characteristics
• Create closure axiom
• Definitions for the defined classes
200pts
Excellent
Includes all 6 components completed
120pts
Good
Includes 5 of the 6 components completed
80pts
Acceptable
Includes 4 of the 6 components completed
0pts
Unacceptable
Includes 3 or less components completed
200pts
This criterion is linked to a Learning OutcomeDiscussion
• All components are discussed from the instructions
• Reflection on ontology creation and Protege
60pts
Excellent
Discussions components are discussed in detail
36pts
Good
One component is missing or lacks detail
24pts
Acceptable
Two components are missing or lack detail
0pts
Unacceptable
Three or more components are missing or lack detail
60pts
This criterion is linked to a Learning OutcomeBibliography
10pts
Excellent
Includes a bibliography and in-text citations that are formatted properly. Three additional sources are cited in APA format.
6pts
Good
Includes a bibliography formatted properly and two additional sources are cited.
4pts
Acceptable
Includes a bibliography and in-text citations but 1-3 formatting errors are present
0pts
Unacceptable
Includes a bibliography and in-text citations but 4 f formatting errors are present
10pts
This criterion is linked to a Learning OutcomeFlow/Clarity of Speaker Notes
10pts
Excellent
Has no grammatical/spelling formatting errors. The text goes from general ideas to specific conclusions. Writing is crisp, clear, and succinct. Content is relevant.
6pts
Good
Has minor grammatical/spelling/reference formatting errors. There is a basic flow from one slide to the next. Writing is generally clear but unnecessary words are used. Meaning is sometimes hidden. Content is not clear.
4pts
Acceptable
Has major grammatical/spelling errors. References are not formatted properly. Hard to know what the author is trying to express.
0pts
Unacceptable
Has major grammatical/spelling errors. References are not included. The presentation appears to have no direction.
10pts
Total Points:400
Answered 5 days After Oct 28, 2022

Solution

Dr Insiyah R. answered on Nov 01 2022
44 Votes
Ontology in healthcare
Name:
Course:
Introduction : What is Ontology
An ontology is a formalised description of knowledge that details the concepts and relationships between them in a particular domain.
To enable such a description, components such as individuals (instances of objects), classes, attributes, relations, requirements, rules, and axioms must be formally specified (Bolt et al,2020).
As a result, ontologies not only provide a reusable and transferable representation of information, but they may also potentially enrich preexisting domain knowledge (Dos Reis et al,2015).
Large-scale ontologies in fields like biomedicine may now be developed collaboratively by a diverse group of distant users thanks to tools like collaborative Protégé, which provide structured logs of updates to the ontology (Bolt et al,2020).
A solution to the problem of evaluating the outcomes of cooperative ontology engineering endeavours is urgently needed, both practically and theoretically.
Management and quality assurance professionals must have a firm grasp on the state of ontologies generated via collaborative efforts. By better understanding these processes, makers of tools may create solutions that are a better suited for collaborative ontology construction (Dos Reis et al,2015).
Why ontologies are important in healthcare
Interoperability across different healthcare systems is one of the biggest challenges in the healthcare industry.
Communication between different parts of healthcare systems is boosted by ontology.
When compared to fields like finance, where ontology is more developed, the timing of interactions between systems is worse here.
Information systems may be made stronger and more compatible with one another with the use of ontology.
They also help with a healthcare procedure that involves reusing, sending, and exchanging the patient's personal data. Ontology is mostly used in the medical field to represent and organise or reorganise medicinal vocabularies. If the issues with medical terminology are to be resolved, ontology must be an integral element of the solution. In contrast to more developed nations, Albania either has extremely little or no understanding in the field of ontology at all.
Ontology created in Protégé
When the ontology data model is applied to a set of facts, a knowledge graph is produced. This structure is a network of entities, with types represented by nodes and edges representing relationships between them.
By outlining the structure of knowledge in a domain, an ontology makes it possible for a data model to gather data in that area (Dos Reis et al,2015).
The ontology editor and framework known as Protégé was created by Stanford University and is available for free and open source use. It is intended to be used in the construction of intelligent systems (Dos Reis et al,2015). Build knowledge-based solutions in fields as varied as biomedicine, e-commerce, and organisational modelling with the help of Protégé, which is used by a large community of users from academic institutions, government agencies, and private companies. Protégé is sponsored by this community (Groß, Pruski, and Rahm, 2016).
Ontology integration
Integrating ontologies co
ectly requires the creation of
idge modules that accurately reflect a shared interpretation of the semantic relations between the various ontology pieces (Dos Reis et al,2015).
Scientists need this in order to quickly compare, align, and utilise data from several streams of empirical research.
Even if the ontologies and annotations (data) are maintained separate, ontology-based assimilation does not affect the way academics in different domains conduct their research or impose any undesirable theoretical or methodological perspectives on them.
When information is annotated using a unified ontology, we get ontology-based integration (Turner and Laird,2012).
Predictions made by experts about the years ahead. Researchers who are responsible for producing primary data should keep annotating data with the use of existing ontologies and submitting it to shared repositories. They should also continue to use ontology-based integration, in which upper- and mid-level ontologies, as well as information standards, are standardised via the creation of syntactic or semantic
idging modules (Gómez, Sanz, and Hernández, 2008).
Using cognitive ontologies in practise
An ontology is a notational framework for representing the...
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